Bwa fail to read the header
WebDec 15, 2024 · Hi, I ran wtdbg2 in the following way and ran into the below 2 Errors: conda activate wtdbg2 # assemble long reads wtdbg2 -x $2 -g $1 -i $4 -t 16 -fo dbg # derive consensus wtpoa-cns -t 16 -i dbg.ctg.lay.gz -fo dbg.raw.fa # polish consen... WebSep 12, 2011 · What is a BWA file? Game file created by Bookworm Adventures Deluxe, a spelling game; saves the player's progress, including the number of chapters completed …
Bwa fail to read the header
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Webbwa 报错fail to locate the index files已解决 索引文件和目录应该没问题？ 是我自己bwa index构建的 image.png 感觉软件也是没问题的 image.png config文件和bwa.sh和fastq文件应该都是对的 image.png bwa 报错 image.png 解决错误 因为我的注释文件的名字是hg38.fa.* ,所以写索引的时候 ... WebThe BWA file extension indicates to your device which app can open the file. However, different programs may use the BWA file type for different types of data. While we do not …
WebDec 4, 2024 · ### samtools faidx reference/ref.fa ### bwa index reference/ref.fa [bwa_index] Pack FASTA... 0.03 sec [bwa_index] Construct BWT for the packed sequence... Webmy genome is build with bismark and have indexed by bwa ; also I have done samtools faidx genome.fa the error message is [main_samview] fail to read the header from …
WebBWA-MEME: BWA-MEM emulated with a machine learning approach. BWA-MEME produces results identical to BWA-MEM2 (or original bwa-mem 0.7.17) and achieves 1.4x higher alignment throughput. Seeding throughput of BWA-MEME is up to 3.32x higher than BWA-MEM2. BWA-MEME builds upon BWA-MEM2 and includes performance … WebJul 6, 2024 · BWA alignment/Samtools; Fail to read the header – Open Source Biology & Genetics Interest Group. Skip to content. Open Source Biology & Genetics Interest …
WebJun 7, 2011 · It looks like the > failure is occurring way down in gzopen. (gzopen will read a normal, > non-gzip'd file, so that's OK). > > The clue is in the fact that you can open the …
WebMay 8, 2024 · Hi, I just setup SeqMule last week and had it running on a custom capture case, which worked fine. I now would like to analyze an exome case, for which I gave this command: seqmule pipeline -a file1.fastq.gz,file2.fastq.gz,file3.fastq.gz... cge javerianaWebAug 3, 2024 · The samtools error is likely because it is receiving no output from the bwa mem command. Try running the bwa mem command by itself, and see if it returns a … cge googleWebDec 15, 2024 · BWA error: no ID within the read group line 3 2.3 years ago whb 50 Hi, I am trying to use parallel and bwa men to align fastqs in batch but it kept giving me the same error [E::bwa_set_rg] no ID within the read group line . I have tried different combination e.g. ' ' instead of " " or no quotes but none of them worked. My fastq files names are: cg ekonomi abWebSep 16, 2024 · New issue Error reading header -- snpEff build with zero frames, and bwa mem subsequently fails #429 Closed phatmattbaker opened this issue Sep 17, 2024 · 2 comments phatmattbaker commented Hi Torsten, Thanks for a great programme and all the helpful answers that got me to this point so far! cges kolektivni ugovorWebBWA is generally slower than Bowtie2 with similar sensitivity and both tools can perform gapped alignment for the identification of indels and can effectively map paired-end reads. However, BWA is a bit more accurate … cg emojiWebOct 22, 2024 · I am trying to use BWA to align reads to a reference genome and keep the discarded reads, as I am looking for potential pathogen DNA (RNA, really) that could … cg elementum projekteWebMar 22, 2012 · Re: [Bio-bwa-help] bwa fail to open file. I have this problem myself. The way to solve is: awk ' {print $1,$2,$3,$4}' ref.ann > ref.new.ann; mv ref.new.ann ref.ann Heng … cg ekosh online nic