Chuiqin/irgsea

Author: bvli

August undefined, 2024

WebJun 6, 2015 · Gouqi Island belongs to a group of nearly 400 islands known as Shengsi Islands, and form a part of the Zhoushan Archipelago, located outside of Hangzhou Bay. … WebThe integration of single cell rank-based gene set enrichment analysis • irGSEA irGSEA Integrate all single cell rank-based gene set enrichment analysis and easy to visualize …

irGSEA - GitHub Pages

WebGrace Quan is a modern reconstruction of a Chinese-American shrimp fishing junk, similar to those in the fleet that operated in San Francisco Bay in the late 19th and early 20th … WebOct 15, 2024 · devtools::install_github("chuiqin/irGSEA") 如果最后devtools::install_github有问题，欢迎学习使用yulabs.utils工具包。如果查下来还不会，欢迎私信交流。 poof couch

Releases · chuiqin/irGSEA · GitHub

WebBy summer’s end, the team completed the construction of the 42-foot-long and 10-foot-wide replica. Grace Quan, named for Frank’s late mother Grace, was launched on Oct. 25, … WebReleases · chuiqin/irGSEA. irGSEA 1.1.3. 08 Apr 08:15 . chuiqin. V1 c42f07f. Compare. Choose a tag to compare. Could not load tags. Nothing to show {{ refName }} default. … WebNov 1, 2024 · Alternatively, cell-type enrichment analysis using the AUCell algorithm in irGSEA revealed the same results (Fig. 4 E–F). We also did cell deconvolution analysis to estimate the proportions of distinct microglia subpopulations in our bulk microglia RNA-seq in CO and ST groups and found a significant increase of “Homeostatic microglia” and ... poof delivery

Bubble plot — irGSEA.bubble • irGSEA - GitHub Pages

Frontiers Clustering and machine learning-based integration …

WebJan 31, 2024 · Single cell RNA sequencing (scRNA-seq) provides a better understanding of cellular behavior in the context of complex tumor microenvironments by analyzing individual cell populations. Methods The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) data was employed to investigate the metabolic pathways in HCC. poof coutureWebGitHub - chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis 当然学习的时候如果觉得好用，也别忘点亮一颗星星支持作者，这也是R语言开源的魅力，我们作为使用者对于好用的工具应该给予肯定和支持 poof delivery service

"WebAug 1, 2024 · chuiqin/irGSEA/) in R software was used. This package was. used to score individual cells using multiple gene set enrichment. methods and generate a multiple gene set enrichment score. matrix. " - Chuiqin/irgsea

Chuiqin/irgsea

Frontiers Single-cell sequencing reveals heterogeneity between ...

WebJul 26, 2024 · In chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis. View source: R/plot.R. irGSEA.ridgeplot: R Documentation: Ridge plot Easy to show the data distribution by ridge plot Description. Ridge plot Easy to show the data distribution by ridge plot Usage WebPostdoctoral Fellow, Luo Lab; Contact Info. Name

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WebJul 26, 2024 · chuiqin/irGSEA / irGSEA.halfvlnplot: Half vlnplot irGSEA.halfvlnplot: Half vlnplot In chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis View source: R/plot.R irGSEA.halfvlnplot R Documentation Half vlnplot Description Easy to show the data distribution by half vlnplot Usage WebIn chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis View source: R/main.R irGSEA.score R Documentation Calculate enrichment scores …

WebGitHub - chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis 当然学习的时候如果觉得好用，也别忘点亮一颗星星支持作者，这也是R语言开源的魅力，我们作为使用者对于好用的工具应该给予肯定和支持 WebJul 26, 2024 · chuiqin/irGSEA The integration of single cell rank-based gene set enrichment analysis Package index Search the chuiqin/irGSEA package Vignettes README.md Functions 21 Source code 3 Man pages 11 irGSEA.barplot: Stacked bar plot irGSEA.bubble: Bubble plot irGSEA.densityheatmap: Density heatmap

WebMar 30, 2024 · The single-sample gene set enrichment analysis (ssGSEA) method was used to construct CAFs related score system CafS. Estimation of immune infiltration We used ssGSEA method and CIBERSORT algorithm ( Newman et al., 2015) to evaluated absolute abundance of multiple immune cell populations. WebSep 1, 2024 · Microglia-specific transcriptional repression of DNA repeats after chronic stress. (A) Genome distribution of down-regulated genes (down_genes, red vertical bars) and DNA repeats (blue vertical bars).

WebReleases · chuiqin/irGSEA. irGSEA 1.1.3. 08 Apr 08:15 . chuiqin. V1 c42f07f. Compare. Choose a tag to compare. Could not load tags. Nothing to show {{ refName }} default. View all tags. irGSEA 1.1.3 Latest. Latest. This version of irGSEA only supports AUCell, UCell, singscore and ssgsea. Assets 3. All reactions.

WebJul 26, 2024 · chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis The integration of single cell rank-based gene set enrichment analysis. Meanwhile, you are easy to visualize the results. Getting started README.md Browse package contents Vignettes Man pages API and functions Files poof de fromageWebirGSEA.score.Rd Input a Seurat object or scRNA-seq matrix, calculate the enrichment scores of AUCell, UCell, singscore and ssgsea. Then, return a Seurat object including … poof cushionWebJul 26, 2024 · chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis The integration of single cell rank-based gene set enrichment … poof dirt farmWebStress-induced neuroinflammation is considered an important mechanism in the pathogenesis of depression. As immune effector cells in the brain, microglia play an essential role in ... poof cryingWebQichun County (simplified Chinese: 蕲春县; traditional Chinese: 蘄春縣; pinyin: Qíchūn Xiàn) is a county of eastern Hubei province, People's Republic of China. It is under the … poof definedWebA list after perform irGSEA.integrate. method: A character. It should be one of the followling : AUCell, UCell, singscore, ssgsea or RRA. Default RRA. top: The top gene sets. Default 50. show.geneset: A vector including special gene sets. Default NULL. ... poof crewneck sweatersWebGitHub - chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis chuiqin / irGSEA Fork master 1 branch 1 tag chuiqin fix the bug of plot … shaping cloud ltd